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Informatics, digital & computational pathology



Authors: Aisha Abdelhafez, M.Sc., Syeda F. Absar, M.D., M.P.H., Vitria Adisetiyo, Ph.D., Yomna Amer, M.B.B.Ch., Swikrity Upadhyay Baskota, M.B.B.S., M.D., Harsh Batra, M.B.B.S., D.C.P., D.N.B., Dariusz Borys, M.D., Charles Caldwell, Ph.D., Po-Hsuan Cameron Chen, Ph.D., Jerome Cheng, M.D., Robin L. Dietz, M.D., Samreen Fathima, M.B.B.S., Roberto Gianani, M.D., Lewis A. Hassell, M.D., Ashley Hein, M.D., Ugochukwu John Jonah, M.B.B.S., Sigfred Lajara, M.D., Michael Landau, M.D., Joshua Levy, Ph.D., Yun Liu, Ph.D., Cris Luengo, Ph.D., David McClintock, M.D., Craig Mermel, M.D., Ph.D., Kunal Nagpal, M.S., David Nai, M.D., Michael Olp, M.D., Ph.D., Liron Pantanowitz, M.D., Anil Parwani, M.D., Ph.D., M.B.A., Nat Pernick, M.D., Jeffrey W. Prichard, D.O., Rebecca Rojansky, M.D., Ph.D., Jasmine Saleh, M.D., M.P.H., Ruhani Sardana, M.B.B.S., Swati Satturwar, M.D., Snehal S. Sonawane, M.B.B.S., M.D., David F. Steiner, M.D., Ph.D., Ngoc Tran, M.D., M.S., Louis Vaickus, M.D., Ph.D., Chris Williams, M.D., Ana Yuil-Valdes, M.D., Mark D. Zarella, Ph.D.

Last staff update: 1 June 2023

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Table of Contents review: Jerome Cheng, M.D. (last reviewed November 2022)

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Table of contents
General:books
Advanced microscopy:augmented reality microscopy (ARM)
Computational pathology:application of graph neural networks to whole slide images (pending) computational methods for molecular pathology (pending) computational pathology fundamentals & applications
Database:database fundamentals (pending) data repositories (pending) structured query language
Digital and whole slide imaging:digital imaging fundamentals & standards WSI fundamentals WSI applications WSI commercial platforms WSI implementation
Fluorescence microscopy:fluorescent microscopy fundamentals & applications multiplex immunofluorescence virtual staining
Image analysis:automated assessment of cytology specimens image analysis fundamentals image analysis applications
Laboratory information systems:APLIS autoverification in the Core Clinical Laboratory (pending) barcoding and tracking data representation and communication standards HL7 V2 LIS additional features (pending) LIS fundamentals LIS installation & implementation (pending) LIS selection (pending) middleware (pending)
Machine learning & deep learning:artificial intelligence (pending) cognition and human-computer interaction in pathology (pending) computer aided detection computer aided diagnosis convolutional neural networks introduction to programming (pending) machine learning fundamentals natural language processing (NLP)
Spectral imaging:spectral imaging
Telepathology:telepathology fundamentals intraoperative consultation telepathology telecytology teledermatopathology
Other applications:cybersecurity (pending) education hematopathology quality assurance (pending) surgical pathology
Superpages: entire chapterimagesvirtual slides
Index (Alphabetical table of contents)
A-E:APLIS application of graph neural networks to whole slide images (pending) artificial intelligence (pending) augmented reality microscopy (ARM) automated assessment of cytology specimens autoverification in the Core Clinical Laboratory (pending) barcoding and tracking cognition and human-computer interaction in pathology (pending) computational methods for molecular pathology (pending) computational pathology fundamentals & applications computer aided detection computer aided diagnosis convolutional neural networks cybersecurity (pending) data repositories (pending) data representation and communication standards database fundamentals (pending) digital imaging fundamentals & standards education
F-N:fluorescent microscopy fundamentals & applications hematopathology HL7 V2 image analysis applications image analysis fundamentals intraoperative consultation telepathology introduction to programming (pending) LIS additional features (pending) LIS fundamentals LIS installation & implementation (pending) LIS selection (pending) machine learning fundamentals middleware (pending) multiplex immunofluorescence natural language processing (NLP)
O-Z:quality assurance (pending) spectral imaging structured query language surgical pathology telecytology teledermatopathology telepathology fundamentals virtual staining WSI applications WSI commercial platforms WSI fundamentals WSI implementation
Informatics, digital & computational pathology books

Cohen: 2020

Holzinger: 2020

Pantanowitz: 2016

Pantanowitz: 2012

Parwani: 2016

Parwani: 2022



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